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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
total RNA-seq
82
ChIP-seq
74
single cell RNA-seq
73
ATAC-seq
47
WGBS
6
DNase-seq
4
Hi-C
2
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
166
Transcription
82
DNA binding
79
DNA accessibility
48
DNA methylation
4
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
15
control
1
RNA binding protein
1
transcription factor
Date released
80
May, 2022
72
September, 2018
41
August, 2017
37
February, 2023
37
July, 2018
33
April, 2018
19
September, 2020
17
June, 2019
9
February, 2021
8
July, 2019
7
August, 2020
6
November, 2020
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
May, 2021
Available data
258
fastq
226
bam
220
bigWig
119
tsv
85
bed narrowPeak
80
zippedFastqFolder
37
bigBed narrowPeak
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
bedpe bed3+
3
cool
3
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
381
Homo sapiens
Biosample type
1052
tissue
381
primary cell
100
in vitro differentiated cells
92
cell line
1
stem cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
228
AMP
152
HPAP
1
T1D
Genome assembly (visualization)
220
GRCh38
215
hg19
Lab
228
AMP-T2D consortium
152
Klaus Kaestner, Upenn
1
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
381 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
primary cell
pancreatic alpha cell
52
13
12
35
31
1
pancreatic beta cell
21
13
12
23
16
1
pancreatic acinar cell
4
8
12
9
1
pancreatic ductal cell
4
13
10
4
pancreatic endocrine cell
23
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