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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
6
WGBS
6
total RNA-seq
4
pCHi-C
1
ATAC-seq
1
DNase-seq
1
RNA microarray
Assay category
77
DNA binding
6
DNA methylation
6
Transcription
2
DNA accessibility
Target of assay
43
histone
43
histone modification
34
control
28
broad histone mark
15
narrow histone mark
Date released
61
August, 2017
18
October, 2018
4
February, 2023
4
June, 2019
2
February, 2020
2
March, 2020
2
October, 2019
1
August, 2018
1
August, 2021
1
May, 2021
Available data
30
bam
28
fastq
21
tagAlign
4
tsv
3
bigWig
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bed narrowPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
95
Homo sapiens
Biosample type
66
tissue
24
in vitro differentiated cells
5
primary cell
1
stem cell
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
1
T1D
Genome assembly (visualization)
hg19
566
GRCh38
Lab
95
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
WGBS
total RNA-seq
pCHi-C
ATAC-seq
DNase-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
3
1
islet of Langerhans
1
1
in vitro differentiated cells
adipocyte
19
1
immature adipocyte
2
preadipocyte
1
white fat cell
1
primary cell
cardiac fibroblast
2
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
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