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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
21
ATAC-seq
8
snATAC-seq
7
total RNA-seq
5
pCHi-C
4
WGBS
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
84
DNA binding
29
DNA accessibility
7
Transcription
5
DNA methylation
1
3D chromatin structure
Target of assay
44
histone
44
histone modification
40
control
28
broad histone mark
16
narrow histone mark
Date released
60
August, 2017
18
October, 2018
14
February, 2023
8
January, 2021
5
August, 2021
5
February, 2021
4
October, 2019
3
February, 2020
3
January, 2019
3
June, 2019
3
November, 2018
2
January, 2018
2
July, 2019
2
March, 2020
1
August, 2018
1
May, 2021
Available data
34
bam
32
fastq
22
tagAlign
9
bigWig
8
bed bed3+
5
bed bed3
5
tsv
4
bed bedgraph
4
bed narrowPeak
3
bigBed narrowPeak
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
133
Homo sapiens
Biosample type
68
tissue
43
in vitro differentiated cells
15
primary cell
7
cell line
1
stem cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
125
AMP
9
T1D
Genome assembly (visualization)
644
hg19
GRCh38
Lab
121
AMP-T2D consortium
9
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
8
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
134 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
pCHi-C
WGBS
Capture-C
Hi-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
3
1
1
C1 segment of cervical spinal cord
1
+ See 1 more…
in vitro differentiated cells
adipocyte
19
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
primary cell
peripheral blood mononuclear cell
8
cardiac fibroblast
2
1
adult endothelial progenitor cell
1
brain pericyte
1
mesenchymal stem cell
1
+ See 1 more…
cell line
GM12878
6
1
stem cell
mesenchymal stem cell
1
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