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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
448
total RNA-seq
74
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
448
Transcription
74
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
33
histone
33
histone modification
24
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
57
August, 2017
23
October, 2018
July, 2019
3
February, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
488
bam
471
bigWig
448
tsv
43
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
537
Homo sapiens
Biosample type
538
tissue
97
in vitro differentiated cells
31
primary cell
1
stem cell
Organ
537
connective tissue
499
pancreas
478
adipose tissue
353
liver
295
kidney
293
heart
254
brain
158
bone element
126
blood vessel
126
vasculature
117
limb
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
538
AMP
Genome assembly (visualization)
472
hg19
470
GRCh38
Lab
538
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
July, 2019
BIOSAMPLE
ASSAY
538 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
3
12
1
1
omental fat pad
1
11
1
2
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