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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
6
DNase-seq
4
ChIP-seq
4
single cell RNA-seq
2
ATAC-seq
2
pCHi-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
15
Transcription
8
DNA accessibility
4
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
histone modification
4
broad histone mark
4
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
9
June, 2019
8
July, 2019
6
November, 2020
3
February, 2021
2
April, 2018
2
July, 2018
1
May, 2021
Available data
28
bam
24
bigWig
15
tsv
9
bed narrowPeak
8
bed bed3+
7
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
31
Homo sapiens
Biosample type
515
tissue
60
in vitro differentiated cells
31
primary cell
1
stem cell
Organ
340
epithelium
288
pancreas
31
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
0
spinal cord
Project
30
AMP
1
T1D
Genome assembly (visualization)
26
hg19
24
GRCh38
Lab
30
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
31 results
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total RNA-seq
DNase-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
primary cell
osteoblast
5
1
2
1
cardiac fibroblast
3
3
1
pancreatic stellate cell
4
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
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