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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
173
ChIP-seq
26
ATAC-seq
10
DNase-seq
8
WGBS
6
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
173
DNA binding
Target of assay
84
histone
84
histone modification
48
broad histone mark
46
transcription factor
43
control
35
narrow histone mark
10
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
117
August, 2017
23
October, 2018
12
June, 2019
7
December, 2018
7
January, 2019
6
November, 2018
1
October, 2019
Available data
122
bam
110
fastq
87
bigWig
70
bed narrowPeak
27
bigBed narrowPeak
22
tagAlign
11
bed bed3+
1
bed broadPeak
Organism
173
Homo sapiens
Biosample type
94
tissue
67
in vitro differentiated cells
12
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
173
AMP
Genome assembly (visualization)
88
hg19
87
GRCh38
Lab
173
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
173 results
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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
spleen
20
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
+ See 2 more…
in vitro differentiated cells
adipocyte
67
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
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