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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
27
DNase-seq
25
ATAC-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
481
Transcription
DNA binding
52
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Date released
455
February, 2021
24
June, 2019
18
July, 2019
14
February, 2023
8
August, 2017
6
November, 2020
5
August, 2021
3
October, 2019
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
513
bigWig
509
bam
478
tsv
35
bed narrowPeak
34
bed bed3+
31
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
11
fastq
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
548
Homo sapiens
Biosample type
491
tissue
30
in vitro differentiated cells
27
primary cell
1
stem cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
548
AMP
1
T1D
Genome assembly (visualization)
531
hg19
509
GRCh38
Lab
544
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
549 results
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total RNA-seq
DNase-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
3
3
1
bone tissue
58
renal pelvis
10
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
2
1
1
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in vitro differentiated cells
adipocyte
5
1
8
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
osteoblast
5
1
2
1
cardiac fibroblast
3
1
pancreatic stellate cell
4
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
+ See 6 more…
stem cell
mesenchymal stem cell
1
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