Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
3
WGBS
3
single cell RNA-seq
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
96
DNA binding
4
DNA accessibility
3
DNA methylation
3
Transcription
Target of assay
41
transcription factor
28
histone
28
histone modification
27
control
15
narrow histone mark
12
broad histone mark
11
RNA binding protein
2
chromatin remodeller
Date released
72
August, 2017
23
October, 2018
6
November, 2017
2
July, 2018
1
April, 2018
1
August, 2018
1
November, 2018
1
October, 2017
Available data
778
bam
725
bigWig
546
tsv
208
bed narrowPeak
111
bigBed narrowPeak
107
fastq
40
bed bed3+
28
tagAlign
27
bed broadPeak
26
bigBed broadPeak
6
bed bed3
5
bed bedMethyl
5
bigBed bedMethyl
4
bed bedgraph
3
bedpe bed3+
3
hdf5
3
hic
1
tar
Organism
107
Homo sapiens
Biosample type
55
in vitro differentiated cells
43
tissue
9
primary cell
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
107
AMP
Genome assembly (visualization)
79
GRCh38
79
hg19
Lab
107
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
107 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
53
1
white fat cell
1
tissue
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
white adipose tissue
12
adipose tissue
2
3
primary cell
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic stellate cell
3
Download