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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
9
DNase-seq
4
ATAC-seq
Assay category
13
DNA accessibility
9
DNA binding
Target of assay
9
histone
9
histone modification
6
RNA binding protein
transcription factor
5
narrow histone mark
4
broad histone mark
Date released
14
June, 2019
3
August, 2017
3
October, 2019
1
November, 2018
1
November, 2020
Available data
553
bam
530
bigWig
478
tsv
62
fastq
52
bed narrowPeak
22
bigBed narrowPeak
22
tagAlign
17
bed bed3+
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
22
Homo sapiens
Biosample type
14
primary cell
5
tissue
3
in vitro differentiated cells
Organ
124
brain
102
kidney
86
heart
84
limb
81
pancreas
78
vasculature
75
blood vessel
69
epithelium
47
musculature of body
44
liver
26
nerve
24
artery
22
connective tissue
18
ureter
13
vein
7
spleen
5
adipose tissue
5
eye
3
blood
3
bodily fluid
Project
22
AMP
Genome assembly (visualization)
21
hg19
19
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
DNase-seq
ATAC-seq
primary cell
mesenchymal stem cell
6
cardiac fibroblast
2
3
brain pericyte
1
hepatic stellate cell
1
osteoblast
1
tissue
adipose tissue
1
1
omental fat pad
2
subcutaneous adipose tissue
1
in vitro differentiated cells
adipocyte
1
2
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