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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
3
ATAC-seq
2
total RNA-seq
1
DNase-seq
1
RRBS
1
pCHi-C
Assay category
10
DNA binding
4
DNA accessibility
2
Transcription
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
transcription factor
Date released
11
June, 2019
4
February, 2023
1
July, 2019
1
March, 2020
1
November, 2019
Available data
12
bam
10
bed narrowPeak
9
bigBed narrowPeak
9
bigWig
3
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
tsv
Organism
18
Homo sapiens
Biosample type
12
primary cell
4
in vitro differentiated cells
1
stem cell
1
tissue
Organ
88
epithelium
84
bone element
80
pancreas
18
connective tissue
14
kidney
9
musculature of body
embryo
5
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
18
AMP
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
18
AMP-T2D consortium
Audit category:
18
inconsistent ontology term
target.investigated_as!
transcription factor
organ_slims!
embryo
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
RRBS
pCHi-C
primary cell
mesenchymal stem cell
7
cardiac fibroblast
3
1
1
in vitro differentiated cells
immature adipocyte
2
2
stem cell
mesenchymal stem cell
1
tissue
adipose tissue(adipose white tissue)
1
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