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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
total RNA-seq
1
GRO-seq
1
RRBS
Assay category
22
DNA binding
1
DNA methylation
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
9
February, 2018
1
January, 2018
1
July, 2019
Available data
23
fastq
22
bam
15
bigWig
14
bed narrowPeak
3
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
24
Homo sapiens
Biosample type
23
in vitro differentiated cells
1
tissue
Organ
602
liver
543
pancreas
393
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
24
AMP
Genome assembly (visualization)
16
hg19
15
GRCh38
1
hg18
Lab
24
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
GRO-seq
RRBS
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
tissue
pericardium
1
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