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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
12
ChIP-seq
Assay category
14
Transcription
12
DNA binding
Target of assay
9
histone
9
histone modification
6
narrow histone mark
3
broad histone mark
2
transcription factor
1
control
Date released
10
February, 2018
8
August, 2021
6
December, 2017
2
May, 2021
Available data
26
bam
25
bigWig
16
fastq
14
tsv
11
bed narrowPeak
2
bed bed3+
Organism
26
Homo sapiens
Biosample type
18
in vitro differentiated cells
8
cell line
Organ
649
pancreas
598
liver
583
connective tissue
426
adipose tissue
306
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
26
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
26
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
1
hg18
Lab
26
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
26 results
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total RNA-seq
ChIP-seq
in vitro differentiated cells
pancreatic endoderm
4
11
Hepatic endoderm
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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