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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
14
total RNA-seq
1
GRO-seq
Assay category
16
DNA binding
14
Transcription
Target of assay
9
histone
9
histone modification
6
narrow histone mark
5
control
3
broad histone mark
2
transcription factor
Date released
13
February, 2018
8
August, 2021
7
December, 2017
2
May, 2021
1
January, 2018
Available data
30
bam
25
bigWig
21
fastq
14
tsv
10
bed narrowPeak
2
bed bed3+
Organism
31
Homo sapiens
Biosample type
23
in vitro differentiated cells
8
cell line
Organ
937
pancreas
764
liver
678
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
34
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
1
hg18
Lab
31
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
organ_slims!
epithelium
BIOSAMPLE
ASSAY
31 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
16
4
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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