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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
76
total RNA-seq
19
ChIP-seq
12
ATAC-seq
1
GRO-seq
1
pCHi-C
Assay category
76
Transcription
19
DNA binding
12
DNA accessibility
Target of assay
10
histone
10
histone modification
7
control
7
narrow histone mark
3
broad histone mark
2
transcription factor
Date released
150
February, 2021
13
February, 2018
10
December, 2017
8
August, 2021
8
February, 2023
3
May, 2021
1
January, 2018
Available data
99
bam
88
txt
84
bigWig
72
tsv
24
fastq
19
bed narrowPeak
4
bed bed3
2
bed bed3+
Organism
193
Homo sapiens
Biosample type
158
tissue
26
in vitro differentiated cells
8
cell line
1
primary cell
Organ
937
pancreas
764
liver
678
connective tissue
519
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
34
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
192
AMP
1
T1D
Genome assembly (visualization)
96
hg19
92
GRCh38
1
hg18
Lab
192
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
89
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
193 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
in vitro differentiated cells
pancreatic endoderm
4
16
1
Hepatic endoderm
3
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
megakaryocyte
1
See all biosamples
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