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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
14
total RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
GRO-seq
Assay category
36
DNA binding
14
Transcription
3
DNA accessibility
2
3D chromatin structure
Target of assay
25
histone
25
histone modification
13
narrow histone mark
12
broad histone mark
9
control
2
transcription factor
Date released
21
October, 2019
13
February, 2018
10
December, 2017
8
August, 2021
2
May, 2021
1
January, 2018
1
March, 2020
Available data
53
bam
41
bigWig
24
bed narrowPeak
24
fastq
14
tsv
13
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
56
Homo sapiens
Biosample type
26
in vitro differentiated cells
22
primary cell
8
cell line
Organ
937
pancreas
764
liver
678
connective tissue
519
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
34
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
43
hg19
38
GRCh38
1
hg18
Lab
56
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
16
4
1
Hepatic endoderm
3
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
cell line
H1-hESC
8
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