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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
9
ChIP-seq
1
GRO-seq
Assay category
14
Transcription
9
DNA binding
Target of assay
histone
10
histone modification
7
control
7
narrow histone mark
3
broad histone mark
2
transcription factor
Date released
8
August, 2021
7
February, 2018
6
December, 2017
2
May, 2021
1
January, 2018
Available data
23
bam
17
bigWig
14
fastq
14
tsv
2
bed narrowPeak
1
bed bed3+
Organism
24
Homo sapiens
Biosample type
16
in vitro differentiated cells
8
cell line
Organ
795
pancreas
674
liver
600
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
24
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
24
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
1
hg18
Lab
24
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
target.investigated_as!
histone
BIOSAMPLE
ASSAY
24 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
7
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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