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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
6
total RNA-seq
1
GRO-seq
Assay category
19
DNA binding
6
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
transcription factor
Date released
13
February, 2018
10
December, 2017
2
May, 2021
1
January, 2018
Available data
25
bam
24
fastq
18
bigWig
11
bed narrowPeak
6
tsv
3
bed bed3+
Organism
26
Homo sapiens
Biosample type
26
in vitro differentiated cells
8
cell line
Organ
75
connective tissue
26
embryo
21
epithelium
13
liver
2
pancreas
1
adipose tissue
1
heart
Project
26
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
1
hg18
Lab
26
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
15
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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