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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
76
total RNA-seq
8
ChIP-seq
4
ATAC-seq
1
GRO-seq
1
pCHi-C
Assay category
76
Transcription
8
DNA binding
4
DNA accessibility
Target of assay
7
control
1
histone
1
histone modification
1
narrow histone mark
Date released
142
February, 2021
8
August, 2021
8
February, 2023
7
February, 2018
5
December, 2017
3
May, 2021
1
January, 2018
Available data
102
bam
88
txt
87
bigWig
72
tsv
27
fastq
bed narrowPeak
4
bed bed3
3
bed bed3+
Organism
174
Homo sapiens
Biosample type
150
tissue
15
in vitro differentiated cells
8
cell line
1
primary cell
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
173
AMP
1
T1D
Genome assembly (visualization)
77
hg19
73
GRCh38
1
hg18
Lab
173
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
88
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
174 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 1 more…
in vitro differentiated cells
pancreatic endoderm
4
6
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
megakaryocyte
1
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