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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
7
DNase-seq
1
Hi-C
Assay category
24
DNA binding
7
DNA accessibility
1
3D chromatin structure
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
narrow histone mark
7
transcription factor
3
control
2
RNA binding protein
Date released
19
August, 2017
4
June, 2019
3
December, 2017
2
November, 2018
2
October, 2019
2
September, 2017
Available data
725
bam
652
bigWig
498
fastq
431
tsv
228
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
32
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
32
Homo sapiens
Biosample type
27
tissue
3
in vitro differentiated cells
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
32
AMP
Genome assembly (visualization)
32
GRCh38
30
hg19
Lab
32
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
1
inconsistent control read length
BIOSAMPLE
ASSAY
32 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
21
body of pancreas
4
pancreas
2
in vitro differentiated cells
pancreatic endoderm
3
cell line
Panc1
1
1
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