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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
76
total RNA-seq
22
ChIP-seq
12
ATAC-seq
1
GRO-seq
Assay category
76
Transcription
22
DNA binding
12
DNA accessibility
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
150
February, 2021
13
December, 2017
13
February, 2018
8
August, 2021
8
February, 2023
2
May, 2021
1
January, 2018
Available data
102
bam
88
txt
87
bigWig
72
tsv
27
fastq
22
bed narrowPeak
4
bed bed3
3
bed bed3+
Organism
195
Homo sapiens
Biosample type
158
tissue
29
in vitro differentiated cells
8
cell line
Organ
725
pancreas
720
liver
679
connective tissue
491
adipose tissue
366
epithelium
353
heart
286
brain
236
vasculature
230
blood vessel
163
kidney
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
195
AMP
Genome assembly (visualization)
99
hg19
95
GRCh38
1
hg18
Lab
195
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
195 results
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Clear Filters
RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
in vitro differentiated cells
pancreatic endoderm
4
18
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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