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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
76
total RNA-seq
22
ChIP-seq
ATAC-seq
1
GRO-seq
Assay category
76
Transcription
22
DNA binding
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
142
February, 2021
13
December, 2017
13
February, 2018
8
August, 2021
4
February, 2023
2
May, 2021
1
January, 2018
Available data
94
bam
88
txt
87
bigWig
72
tsv
27
fastq
14
bed narrowPeak
3
bed bed3+
Organism
183
Homo sapiens
Biosample type
146
tissue
29
in vitro differentiated cells
8
cell line
Organ
717
liver
656
connective tissue
656
pancreas
485
adipose tissue
312
epithelium
306
heart
282
brain
190
vasculature
184
blood vessel
163
kidney
146
bone element
114
limb
96
artery
95
musculature of body
60
blood
60
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
183
AMP
Genome assembly (visualization)
87
GRCh38
87
hg19
1
hg18
Lab
183
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
183 results
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RNA microarray
total RNA-seq
ChIP-seq
GRO-seq
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 1 more…
in vitro differentiated cells
pancreatic endoderm
4
18
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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