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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
16
total RNA-seq
12
ATAC-seq
1
GRO-seq
Assay category
18
DNA binding
16
Transcription
12
DNA accessibility
Target of assay
10
histone
10
histone modification
6
narrow histone mark
5
control
4
broad histone mark
3
transcription factor
Date released
13
February, 2018
9
December, 2017
8
August, 2021
8
February, 2021
8
February, 2023
May, 2021
1
January, 2018
Available data
38
bam
25
bigWig
23
fastq
20
bed narrowPeak
12
tsv
4
bed bed3
4
txt
3
bed bed3+
Organism
47
Homo sapiens
Biosample type
23
in vitro differentiated cells
16
tissue
8
cell line
Organ
885
pancreas
791
liver
682
connective tissue
epithelium
491
adipose tissue
390
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
35
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
37
hg19
33
GRCh38
1
hg18
Lab
47
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
month_released!
May, 2021
organ_slims!
epithelium
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
cell line
H1-hESC
8
See all biosamples
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