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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
28
ATAC-seq
27
ChIP-seq
4
DNase-seq
4
pCHi-C
1
GRO-seq
1
RRBS
Assay category
32
DNA accessibility
31
Transcription
27
DNA binding
1
DNA methylation
Target of assay
15
histone
15
histone modification
11
narrow histone mark
8
control
4
broad histone mark
4
transcription factor
1
RNA binding protein
Date released
31
February, 2023
21
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
7
June, 2019
May, 2021
1
February, 2020
1
January, 2018
1
July, 2019
Available data
47
bed narrowPeak
41
bam
33
bigWig
27
fastq
17
tsv
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
96
Homo sapiens
Biosample type
56
tissue
27
in vitro differentiated cells
8
cell line
5
primary cell
Organ
885
pancreas
791
liver
682
connective tissue
498
epithelium
491
adipose tissue
354
kidney
350
heart
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
35
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
96
AMP
Genome assembly (visualization)
61
hg19
33
GRCh38
1
hg18
Lab
96
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
May, 2021
BIOSAMPLE
ASSAY
96 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
GRO-seq
RRBS
tissue
islet of Langerhans
14
1
2
4
retina
3
15
3
pigmented layer of retina
2
12
in vitro differentiated cells
pancreatic endoderm
4
18
1
Hepatic endoderm
4
cell line
H1-hESC
8
primary cell
retinal pigment epithelial cell
3
1
1
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