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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
27
ChIP-seq
23
total RNA-seq
4
DNase-seq
4
pCHi-C
1
GRO-seq
1
RRBS
Assay category
32
DNA accessibility
27
DNA binding
23
Transcription
1
DNA methylation
Target of assay
15
histone
15
histone modification
11
narrow histone mark
8
control
4
broad histone mark
4
transcription factor
1
RNA binding protein
Date released
31
February, 2023
21
October, 2019
13
December, 2017
13
February, 2018
7
June, 2019
May, 2021
1
February, 2020
1
January, 2018
1
July, 2019
Available data
47
bed narrowPeak
33
bam
27
fastq
25
bigWig
9
tsv
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
88
Homo sapiens
Biosample type
56
tissue
27
in vitro differentiated cells
cell line
5
primary cell
Organ
814
pancreas
682
connective tissue
491
adipose tissue
440
epithelium
390
liver
335
kidney
324
heart
286
brain
170
vasculature
164
blood vessel
158
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
27
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
53
hg19
25
GRCh38
1
hg18
Lab
88
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
May, 2021
biosample_type!
cell line
BIOSAMPLE
ASSAY
88 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
GRO-seq
RRBS
tissue
islet of Langerhans
1
2
14
4
retina
15
3
3
pigmented layer of retina
12
2
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
primary cell
retinal pigment epithelial cell
3
1
1
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