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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
6
total RNA-seq
1
GRO-seq
Assay category
18
DNA binding
6
Transcription
Target of assay
10
histone
10
histone modification
6
narrow histone mark
5
control
4
broad histone mark
3
transcription factor
Date released
13
February, 2018
9
December, 2017
2
May, 2021
1
January, 2018
Available data
24
bam
23
fastq
19
bigWig
12
bed narrowPeak
6
tsv
3
bed bed3+
Organism
25
Homo sapiens
Biosample type
25
in vitro differentiated cells
cell line
Organ
854
pancreas
684
connective tissue
491
adipose tissue
epithelium
390
liver
335
kidney
287
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
19
GRCh38
19
hg19
1
hg18
Lab
25
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
organ_slims!
epithelium
biosample_type!
cell line
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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