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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
9
ChIP-seq
1
GRO-seq
Assay category
10
Transcription
9
DNA binding
Target of assay
4
histone
4
histone modification
3
narrow histone mark
3
transcription factor
2
control
1
broad histone mark
Date released
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
1
January, 2018
Available data
19
bam
17
bigWig
10
fastq
10
tsv
6
bed narrowPeak
3
bed bed3+
Organism
20
Homo sapiens
Biosample type
12
in vitro differentiated cells
8
cell line
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
24
embryo
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
20
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
1
hg18
Lab
20
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
organ_slims!
epithelium
month_released!
February, 2018
BIOSAMPLE
ASSAY
20 results
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total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
9
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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