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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
551
ChIP-seq
198
total RNA-seq
22
ATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
GRO-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
551
DNA binding
202
Transcription
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
339
transcription factor
111
control
98
histone modification
97
histone
82
recombinant protein
59
narrow histone mark
56
RNA binding protein
38
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
57
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
39
August, 2021
13
February, 2018
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
May, 2021
1
December, 2018
1
February, 2020
1
January, 2018
1
June, 2019
Available data
687
bam
625
bigWig
473
fastq
434
bed narrowPeak
343
bigBed narrowPeak
183
tsv
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
11
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
796
Homo sapiens
Biosample type
409
cell line
361
tissue
25
in vitro differentiated cells
1
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
796
AMP
Genome assembly (visualization)
626
hg19
534
GRCh38
1
hg18
Lab
725
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
14
missing controlled_by
Audit category:
29
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
796 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
GRO-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
2
1
H1-hESC
8
tissue
liver
145
167
20
2
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
in vitro differentiated cells
pancreatic endoderm
18
4
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
hepatic stellate cell
1
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