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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
36
DNase-seq
21
total RNA-seq
8
ATAC-seq
4
Hi-C
1
WGBS
Assay category
88
DNA binding
44
DNA accessibility
21
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
61
histone
61
histone modification
38
broad histone mark
24
control
23
narrow histone mark
3
transcription factor
Date released
69
October, 2019
32
June, 2019
13
December, 2017
13
February, 2018
8
August, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
2
May, 2021
January, 2018
Available data
150
bam
119
bigWig
106
bed narrowPeak
84
bigBed narrowPeak
39
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
26
fastq
21
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
158
Homo sapiens
Biosample type
122
tissue
28
in vitro differentiated cells
8
cell line
Organ
946
pancreas
791
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
158
AMP
Genome assembly (visualization)
125
GRCh38
125
hg19
Lab
158
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
small intestine
month_released!
January, 2018
BIOSAMPLE
ASSAY
158 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 9 more…
in vitro differentiated cells
pancreatic endoderm
18
4
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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