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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
7
ChIP-seq
1
GRO-seq
Assay category
14
Transcription
7
DNA binding
Target of assay
12
histone
12
histone modification
narrow histone mark
control
4
broad histone mark
3
transcription factor
Date released
8
August, 2021
7
February, 2018
4
December, 2017
2
May, 2021
1
January, 2018
Available data
22
bigWig
21
bam
14
tsv
12
fastq
7
bed narrowPeak
1
bed bed3+
Organism
22
Homo sapiens
Biosample type
14
in vitro differentiated cells
8
cell line
Organ
820
pancreas
623
liver
616
connective tissue
455
adipose tissue
445
epithelium
333
heart
327
kidney
188
vasculature
184
blood vessel
159
bone element
138
brain
126
artery
90
limb
77
musculature of body
62
blood
62
bodily fluid
57
eye
24
nerve
22
embryo
20
lung
18
ureter
16
skeleton
15
spleen
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
21
GRCh38
21
hg19
1
hg18
Lab
22
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
inconsistent control read length
organ_slims!
vein
target.investigated_as!
control
narrow histone mark
BIOSAMPLE
ASSAY
22 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
7
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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