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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
14
total RNA-seq
8
snATAC-seq
ATAC-seq
1
GRO-seq
Assay category
82
DNA binding
14
Transcription
8
DNA accessibility
Target of assay
54
transcription factor
13
control
13
histone
13
histone modification
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
4
broad histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
13
December, 2017
13
February, 2018
8
August, 2021
8
January, 2021
2
May, 2021
1
January, 2018
Available data
96
bam
87
fastq
83
bigWig
68
bed narrowPeak
54
bigBed narrowPeak
14
tsv
3
bed bed3+
Organism
105
Homo sapiens
Biosample type
68
cell line
29
in vitro differentiated cells
8
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
97
AMP
8
T1D
Genome assembly (visualization)
83
GRCh38
83
hg19
1
hg18
Lab
97
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
total RNA-seq
snATAC-seq
GRO-seq
cell line
GM12878
60
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
peripheral blood mononuclear cell
8
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