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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
14
total RNA-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
14
Transcription
9
DNA accessibility
Date released
8
August, 2021
8
January, 2021
4
February, 2018
2
January, 2018
2
May, 2021
Available data
16
bigWig
14
bam
14
tsv
5
fastq
Organism
24
Homo sapiens
Biosample type
9
cell line
8
primary cell
7
in vitro differentiated cells
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
16
AMP
8
T1D
Genome assembly (visualization)
15
hg19
14
GRCh38
1
hg18
Lab
16
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
24 results
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total RNA-seq
snATAC-seq
ATAC-seq
GRO-seq
cell line
H1-hESC
8
GM12878
1
primary cell
peripheral blood mononuclear cell
8
in vitro differentiated cells
pancreatic endoderm
4
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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