Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
14
total RNA-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
81
DNA binding
14
Transcription
9
DNA accessibility
Target of assay
53
transcription factor
13
control
13
histone
13
histone modification
10
RNA binding protein
9
chromatin remodeller
9
narrow histone mark
4
broad histone mark
Date released
26
December, 2018
18
January, 2019
15
November, 2018
13
December, 2017
13
February, 2018
8
August, 2021
8
January, 2021
2
January, 2018
2
May, 2021
Available data
95
bam
86
fastq
83
bigWig
67
bed narrowPeak
53
bigBed narrowPeak
14
tsv
3
bed bed3+
Organism
105
Homo sapiens
Biosample type
68
cell line
29
in vitro differentiated cells
8
primary cell
Organ
946
pancreas
764
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
97
AMP
8
T1D
Genome assembly (visualization)
83
hg19
82
GRCh38
1
hg18
Lab
97
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
105 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
GRO-seq
cell line
GM12878
59
1
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
peripheral blood mononuclear cell
8
Download