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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
14
total RNA-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
79
DNA binding
14
Transcription
9
DNA accessibility
Target of assay
54
transcription factor
12
control
11
histone
11
histone modification
10
RNA binding protein
10
chromatin remodeller
8
narrow histone mark
3
broad histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
13
February, 2018
10
December, 2017
8
August, 2021
8
January, 2021
2
January, 2018
2
May, 2021
Available data
96
bam
87
fastq
84
bigWig
68
bed narrowPeak
54
bigBed narrowPeak
14
tsv
bed bed3+
Organism
103
Homo sapiens
Biosample type
69
cell line
26
in vitro differentiated cells
8
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
8
T1D
Genome assembly (visualization)
81
hg19
80
GRCh38
1
hg18
Lab
95
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
103 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
GRO-seq
cell line
GM12878
60
1
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
15
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
peripheral blood mononuclear cell
8
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