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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
14
total RNA-seq
Assay category
68
DNA binding
14
Transcription
Target of assay
54
transcription factor
12
histone
12
histone modification
10
RNA binding protein
10
chromatin remodeller
8
narrow histone mark
4
broad histone mark
Date released
27
December, 2018
15
January, 2019
12
November, 2018
10
February, 2018
8
August, 2021
8
December, 2017
January, 2018
2
May, 2021
Available data
96
bam
86
fastq
82
bigWig
68
bed narrowPeak
54
bigBed narrowPeak
14
tsv
3
bed bed3+
Organism
82
Homo sapiens
Biosample type
62
cell line
20
in vitro differentiated cells
Organ
623
pancreas
622
liver
569
connective tissue
424
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
67
musculature of body
58
bone element
54
blood
54
bodily fluid
31
nerve
28
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
82
AMP
Genome assembly (visualization)
82
GRCh38
82
hg19
Lab
82
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
inconsistent control
Audit category:
3
inconsistent control read length
month_released!
January, 2018
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
total RNA-seq
cell line
GM12878
54
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
12
4
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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