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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
14
total RNA-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
69
DNA binding
14
Transcription
9
DNA accessibility
Target of assay
54
transcription factor
13
control
13
histone
histone modification
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
4
broad histone mark
Date released
27
December, 2018
17
January, 2019
15
November, 2018
8
August, 2021
8
January, 2021
7
December, 2017
7
February, 2018
2
January, 2018
2
May, 2021
Available data
83
bam
74
fastq
72
bigWig
56
bed narrowPeak
53
bigBed narrowPeak
14
tsv
1
bed bed3+
Organism
93
Homo sapiens
Biosample type
68
cell line
17
in vitro differentiated cells
8
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
8
T1D
Genome assembly (visualization)
72
hg19
71
GRCh38
1
hg18
Lab
85
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent control read length
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
GRO-seq
cell line
GM12878
59
1
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
8
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
peripheral blood mononuclear cell
8
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