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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
4
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
GRO-seq
Assay category
40
DNA binding
4
Transcription
3
DNA accessibility
Target of assay
22
histone
22
histone modification
12
control
12
narrow histone mark
10
broad histone mark
6
transcription factor
3
RNA binding protein
Date released
13
December, 2017
13
February, 2018
10
October, 2017
9
November, 2017
2
November, 2018
1
January, 2018
Available data
393
bam
342
bigWig
309
bed narrowPeak
211
bigBed narrowPeak
118
tagAlign
83
bed broadPeak
74
bed bed3+
74
bigBed broadPeak
48
fastq
47
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
48
Homo sapiens
Biosample type
27
in vitro differentiated cells
12
tissue
9
primary cell
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
0
limb
Project
48
AMP
Genome assembly (visualization)
36
hg19
34
GRCh38
1
hg18
Lab
48
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
tissue
brain
9
2
cerebellum (Hemisphere)
1
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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