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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
33
DNase-seq
total RNA-seq
6
Hi-C
5
RRBS
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
GRO-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
61
DNA binding
35
DNA accessibility
6
3D chromatin structure
6
DNA methylation
3
Transcription
Target of assay
45
histone
45
histone modification
24
broad histone mark
21
narrow histone mark
13
control
3
transcription factor
Date released
43
June, 2019
26
August, 2017
13
December, 2017
9
February, 2018
8
July, 2019
7
May, 2019
4
March, 2020
2
January, 2018
2
May, 2022
Available data
79
bigWig
75
bam
74
bed narrowPeak
47
bigBed narrowPeak
46
bed broadPeak
37
bed bed3+
33
bigBed broadPeak
25
fastq
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
4
tsv
2
bedpe bed3+
2
hic
1
txt
Organism
114
Homo sapiens
Biosample type
78
tissue
23
in vitro differentiated cells
13
primary cell
Organ
602
liver
543
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
114
AMP
Genome assembly (visualization)
84
hg19
64
GRCh38
1
hg18
Lab
114
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
ATAC-seq
GRO-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
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in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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