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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
1
GRO-seq
Assay category
22
DNA binding
10
DNA accessibility
9
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
19
April, 2020
13
December, 2017
9
February, 2018
1
January, 2018
Available data
36
bam
29
bigWig
27
fastq
tsv
14
bed narrowPeak
3
bed bed3+
Organism
41
Homo sapiens
Biosample type
23
in vitro differentiated cells
19
tissue
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
23
AMP
19
LungMap
Genome assembly (visualization)
15
GRCh38
15
hg19
1
hg18
Lab
23
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
tsv
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
tissue
lung
10
9
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