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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
10
ChIP-seq
1
GRO-seq
1
pCHi-C
Assay category
14
Transcription
10
DNA binding
Target of assay
16
histone
histone modification
12
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
8
August, 2021
7
December, 2017
7
February, 2018
2
May, 2021
1
January, 2018
1
March, 2020
Available data
24
bam
18
bigWig
15
fastq
15
tsv
3
bed narrowPeak
1
bed bed3+
Organism
26
Homo sapiens
Biosample type
17
in vitro differentiated cells
8
cell line
1
tissue
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
1
hg18
Lab
26
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
26 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
4
8
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
tissue
ovary
1
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