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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
total RNA-seq
9
ChIP-seq
1
GRO-seq
1
RRBS
Assay category
15
Transcription
9
DNA binding
1
DNA methylation
Target of assay
6
histone
6
histone modification
3
broad histone mark
3
control
3
narrow histone mark
Date released
December, 2017
13
February, 2018
8
August, 2021
2
July, 2019
2
May, 2021
1
January, 2018
Available data
24
bam
22
bigWig
15
tsv
14
fastq
6
bed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
26
Homo sapiens
Biosample type
16
in vitro differentiated cells
8
cell line
1
primary cell
1
tissue
Organ
946
pancreas
728
liver
684
connective tissue
505
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
24
embryo
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
22
hg19
21
GRCh38
1
hg18
Lab
26
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
December, 2017
BIOSAMPLE
ASSAY
26 results
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total RNA-seq
ChIP-seq
GRO-seq
RRBS
in vitro differentiated cells
pancreatic endoderm
4
9
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
pericardium fibroblast
1
tissue
pericardium
1
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