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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
13
total RNA-seq
1
GRO-seq
1
RRBS
Assay category
22
DNA binding
13
Transcription
1
DNA methylation
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
13
February, 2018
8
August, 2021
2
July, 2019
May, 2021
1
January, 2018
Available data
35
bam
28
bigWig
27
fastq
14
bed narrowPeak
13
tsv
3
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
37
Homo sapiens
Biosample type
27
in vitro differentiated cells
8
cell line
1
primary cell
1
tissue
Organ
885
pancreas
791
liver
682
connective tissue
498
epithelium
491
adipose tissue
354
kidney
350
heart
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
35
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
29
hg19
28
GRCh38
1
hg18
Lab
37
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
May, 2021
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
total RNA-seq
GRO-seq
RRBS
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
cell line
H1-hESC
8
primary cell
pericardium fibroblast
1
tissue
pericardium
1
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