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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
16
total RNA-seq
12
ATAC-seq
1
GRO-seq
Assay category
22
DNA binding
16
Transcription
12
DNA accessibility
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
13
February, 2018
8
August, 2021
8
February, 2021
8
February, 2023
May, 2021
1
January, 2018
Available data
42
bam
27
bigWig
27
fastq
22
bed narrowPeak
12
tsv
4
bed bed3
4
txt
3
bed bed3+
Organism
51
Homo sapiens
Biosample type
27
in vitro differentiated cells
16
tissue
8
cell line
Organ
885
pancreas
791
liver
682
connective tissue
498
epithelium
491
adipose tissue
354
kidney
350
heart
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
35
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
39
hg19
35
GRCh38
1
hg18
Lab
51
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
May, 2021
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
cell line
H1-hESC
8
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