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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
11
ChIP-seq
1
GRO-seq
Assay category
14
Transcription
11
DNA binding
Target of assay
12
histone
12
histone modification
8
narrow histone mark
control
broad histone mark
3
transcription factor
Date released
8
August, 2021
8
December, 2017
7
February, 2018
2
May, 2021
1
January, 2018
Available data
25
bam
25
bigWig
16
fastq
14
tsv
10
bed narrowPeak
1
bed bed3+
Organism
26
Homo sapiens
Biosample type
18
in vitro differentiated cells
8
cell line
Organ
815
pancreas
641
liver
605
connective tissue
450
epithelium
447
adipose tissue
327
kidney
296
heart
185
brain
169
vasculature
164
blood vessel
159
bone element
118
artery
71
limb
70
musculature of body
63
blood
63
bodily fluid
60
eye
26
embryo
20
lung
18
ureter
16
nerve
16
skeleton
13
spleen
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
24
GRCh38
24
hg19
1
hg18
Lab
26
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
target.investigated_as!
control
broad histone mark
BIOSAMPLE
ASSAY
26 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
9
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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