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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
total RNA-seq
14
ChIP-seq
1
GRO-seq
1
RRBS
Assay category
15
Transcription
14
DNA binding
1
DNA methylation
Target of assay
12
histone
12
histone modification
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
8
August, 2021
8
December, 2017
2
July, 2019
2
May, 2021
1
January, 2018
Available data
29
bam
23
bigWig
19
fastq
15
tsv
7
bed narrowPeak
2
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
31
Homo sapiens
Biosample type
21
in vitro differentiated cells
8
cell line
1
primary cell
1
tissue
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
339
kidney
328
heart
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
24
hg19
23
GRCh38
1
hg18
Lab
31
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
31 results
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total RNA-seq
ChIP-seq
GRO-seq
RRBS
in vitro differentiated cells
pancreatic endoderm
4
12
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
pericardium fibroblast
1
tissue
pericardium
1
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