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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
18
DNase-seq
14
total RNA-seq
1
GRO-seq
Assay category
19
DNA binding
18
DNA accessibility
14
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
transcription factor
Date released
18
June, 2019
13
February, 2018
10
December, 2017
8
August, 2021
2
May, 2021
1
January, 2018
Available data
51
bam
44
bigWig
29
bed narrowPeak
24
fastq
21
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
18
bigBed narrowPeak
14
tsv
Organism
52
Homo sapiens
Biosample type
26
in vitro differentiated cells
18
tissue
8
cell line
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
344
kidney
341
heart
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
44
GRCh38
44
hg19
1
hg18
Lab
52
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
52 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
15
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
cell line
H1-hESC
8
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