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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ATAC-seq
55
total RNA-seq
47
WGBS
8
DNase-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
73
DNA accessibility
55
Transcription
47
DNA methylation
DNA binding
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
40
February, 2023
19
September, 2020
16
May, 2021
7
August, 2020
6
February, 2021
6
June, 2019
6
November, 2020
2
August, 2021
2
October, 2019
1
December, 2019
Available data
80
zippedFastqFolder
69
fastq
16
bigWig
9
tsv
6
bam
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
Organism
184
Homo sapiens
Biosample type
157
primary cell
25
cell line
3
tissue
Organ
233
pancreas
212
kidney
185
epithelium
145
heart
89
bone element
48
blood vessel
48
vasculature
43
liver
39
artery
27
brain
24
eye
20
lung
18
connective tissue
11
adipose tissue
11
musculature of body
8
blood
8
bodily fluid
8
limb
4
skeleton
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
36
AMP
Genome assembly (visualization)
hg19
197
GRCh38
Lab
149
Klaus Kaestner, Upenn
30
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
24
inconsistent ontology term
1
audit script error
assay_slims!
DNA binding
assembly!
hg19
BIOSAMPLE
ASSAY
185 results
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ATAC-seq
total RNA-seq
WGBS
DNase-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
pancreatic acinar cell
4
kidney tubule cell
3
glomerular visceral epithelial cell
2
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cell line
EndoC_BH1
16
6
2
1
tissue
pigmented layer of retina
2
renal glomerulus
1
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