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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
72
ChIP-seq
66
single cell RNA-seq
32
ATAC-seq
Assay category
147
Transcription
72
DNA binding
32
DNA accessibility
DNA methylation
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
17
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
29
August, 2017
19
December, 2017
19
September, 2020
7
August, 2020
6
November, 2017
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
317
bam
301
bigWig
251
fastq
151
bed narrowPeak
150
tsv
76
bigBed narrowPeak
39
zippedFastqFolder
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
251
Homo sapiens
Biosample type
232
primary cell
19
in vitro differentiated cells
Organ
462
liver
461
pancreas
251
epithelium
98
connective tissue
60
blood
60
bodily fluid
41
adipose tissue
27
embryo
22
spleen
21
brain
6
vasculature
3
blood vessel
Project
188
AMP
63
HPAP
Genome assembly (visualization)
181
GRCh38
173
hg19
Lab
188
AMP-T2D consortium
63
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
251 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
primary cell
pancreatic alpha cell
52
13
12
13
pancreatic beta cell
21
13
12
10
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
pancreatic delta cell
11
+ See 5 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
See all biosamples
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