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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ATAC-seq
57
ChIP-seq
41
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
1
RNA microarray
Assay category
57
DNA binding
Target of assay
42
histone
42
histone modification
21
broad histone mark
21
narrow histone mark
10
control
5
transcription factor
4
RNA binding protein
Date released
24
October, 2019
13
November, 2019
6
June, 2019
5
May, 2019
4
August, 2021
4
May, 2021
1
March, 2020
Available data
129
bam
101
bigWig
97
bed narrowPeak
fastq
36
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
57
Homo sapiens
Biosample type
39
primary cell
15
cell line
3
in vitro differentiated cells
Organ
200
brain
134
heart
100
liver
96
blood vessel
96
vasculature
71
pancreas
66
limb
63
connective tissue
57
epithelium
52
kidney
39
musculature of body
36
adipose tissue
35
nerve
34
artery
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
55
AMP
2
T1D
Genome assembly (visualization)
44
hg19
42
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
assay_slims!
Transcription
assay_title!
FAIRE-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
57 results
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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein
17
epithelial cell of proximal tubule
10
kidney epithelial cell
5
hepatocyte
4
retinal pigment epithelial cell
3
cell line
EndoC_BH1
15
in vitro differentiated cells
pancreatic PP cell
3
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