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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
DNase-seq
3
ChIP-seq
2
Hi-C
Assay category
14
DNA accessibility
3
DNA binding
2
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
14
June, 2019
3
August, 2021
2
July, 2019
October, 2019
Available data
142
bam
133
bigWig
130
bed narrowPeak
110
fastq
80
zippedFastqFolder
62
bigBed narrowPeak
19
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
8
tsv
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
5
bedpe bed3+
5
hic
3
cool
2
hdf5
Organism
19
Homo sapiens
Biosample type
19
primary cell
Organ
78
kidney
35
brain
34
musculature of body
32
limb
30
heart
27
connective tissue
27
pancreas
19
epithelium
18
ureter
13
liver
9
vasculature
7
blood vessel
6
adipose tissue
4
eye
3
embryo
2
artery
1
spleen
Project
19
AMP
Genome assembly (visualization)
17
GRCh38
13
hg19
Lab
19
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
month_released!
October, 2019
BIOSAMPLE
ASSAY
19 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
hepatocyte
1
3
brain microvascular endothelial cell
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
choroid plexus epithelial cell
1
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