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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
35
ATAC-seq
14
DNase-seq
Assay category
81
DNA binding
49
DNA accessibility
Target of assay
72
histone
72
histone modification
40
narrow histone mark
32
broad histone mark
9
transcription factor
8
RNA binding protein
1
chromatin remodeller
Date released
35
September, 2018
October, 2019
18
June, 2019
17
August, 2017
16
December, 2017
12
February, 2023
12
November, 2019
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2021
3
May, 2021
1
March, 2020
Available data
142
bam
133
bigWig
130
bed narrowPeak
110
fastq
80
zippedFastqFolder
62
bigBed narrowPeak
19
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
8
tsv
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
5
bedpe bed3+
5
hic
3
cool
2
hdf5
Organism
130
Homo sapiens
Biosample type
86
primary cell
18
in vitro differentiated cells
14
cell line
12
tissue
Organ
435
liver
207
pancreas
186
heart
167
kidney
130
epithelium
128
brain
99
vasculature
95
blood vessel
75
connective tissue
60
musculature of body
54
blood
54
bodily fluid
53
artery
44
limb
33
eye
18
ureter
14
embryo
14
spleen
13
adipose tissue
8
bone element
8
skeleton
Project
128
AMP
2
T1D
Genome assembly (visualization)
124
hg19
118
GRCh38
Lab
130
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
assay_slims!
Transcription
month_released!
October, 2019
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
ATAC-seq
DNase-seq
primary cell
pancreatic ductal cell
13
4
pancreatic beta cell
7
7
pancreatic acinar cell
8
5
pancreatic alpha cell
7
6
kidney epithelial cell
4
1
+ See 11 more…
in vitro differentiated cells
hepatocyte
14
Hepatic endoderm
2
pancreatic PP cell
2
cell line
EndoC_BH1
13
1
tissue
pigmented layer of retina
12
See all biosamples
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